J3_6VYS_022
3D structure
- PDB id
- 6VYS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 6VYS|1|a|U|2334
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VYS_022 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.175
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6VYS|1|a|C|2295
6VYS|1|a|U|2296
6VYS|1|a|A|2297
6VYS|1|a|A|2298
6VYS|1|a|U|2299
*
6VYS|1|a|A|2317
6VYS|1|a|G|2318
6VYS|1|a|G|2319
6VYS|1|a|U|2320
6VYS|1|a|U|2321
6VYS|1|a|A|2322
6VYS|1|a|G|2323
*
6VYS|1|a|C|2332
6VYS|1|a|A|2333
6VYS|1|a|U|2334
6VYS|1|a|A|2335
6VYS|1|a|A|2336
6VYS|1|a|G|2337
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain b
- 50S ribosomal protein L27
- Chain d
- 5S ribosomal RNA; 5S rRNA
- Chain n
- 50S ribosomal protein L5
- Chain x
- 50S ribosomal protein L18
Coloring options: