3D structure

PDB id
6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VZ2_016 not in the Motif Atlas
Homologous match to J3_5J7L_039
Geometric discrepancy: 0.0531
The information below is about J3_5J7L_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.7
Basepair signature
cWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

6VZ2|1|a|C|698
6VZ2|1|a|A|699
6VZ2|1|a|G|700
*
6VZ2|1|a|C|732
6VZ2|1|a|G|733
6VZ2|1|a|A|734
6VZ2|1|a|A|735
6VZ2|1|a|C|736
*
6VZ2|1|a|G|760
6VZ2|1|a|A|761
6VZ2|1|a|U|762
6VZ2|1|a|G|763

Current chains

Chain a
23S rRNA

Nearby chains

Chain h
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1938 s