J3_6VZ2_017

3D structure

PDB id

6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

AGGA*UUUAAAG*CACU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VZ2_017 not in the Motif Atlas

Geometric match to J3_8VTW_042

Geometric discrepancy: 0.3041

The information below is about J3_8VTW_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46457.1

Basepair signature

cWW-F-F-F-F-cSS-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6VZ2|1|a|A|1054
6VZ2|1|a|G|1055
6VZ2|1|a|G|1056
6VZ2|1|a|A|1057
*
6VZ2|1|a|U|1081
6VZ2|1|a|U|1082
6VZ2|1|a|U|1083
6VZ2|1|a|A|1084
6VZ2|1|a|A|1085
6VZ2|1|a|A|1086
6VZ2|1|a|G|1087
*
6VZ2|1|a|C|1102
6VZ2|1|a|A|1103
6VZ2|1|a|C|1104
6VZ2|1|a|U|1105

Current chains

Chain a

23S rRNA

Nearby chains

Chain q

50S ribosomal protein L36