3D structure

PDB id
6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VZ2_029 not in the Motif Atlas
Homologous match to J3_5J7L_005
Geometric discrepancy: 0.1134
The information below is about J3_5J7L_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.4
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

6VZ2|1|D|U|943
6VZ2|1|D|G|944
6VZ2|1|D|G|945
6VZ2|1|D|A|946
*
6VZ2|1|D|U|1235
6VZ2|1|D|A|1236
6VZ2|1|D|C|1237
*
6VZ2|1|D|G|1337
6VZ2|1|D|G|1338
6VZ2|1|D|A|1339
6VZ2|1|D|A|1340

Current chains

Chain D
16S rRNA

Nearby chains

Chain A
Transfer RNA; tRNA
Chain B
Transfer RNA; tRNA
Chain O
30S ribosomal protein S9
Chain X
30S ribosomal protein S13

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0983 s