J3_6VZJ_015

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6VZJ|1|a|U|686, 6VZJ|1|a|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VZJ_015 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0548

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6VZJ|1|a|U|683
6VZJ|1|a|G|684
6VZJ|1|a|A|685
6VZJ|1|a|U|686
6VZJ|1|a|C|687
6VZJ|1|a|U|688
6VZJ|1|a|A|689
*
6VZJ|1|a|U|773
6VZJ|1|a|G|774
6VZJ|1|a|G|775
*
6VZJ|1|a|C|791
6VZJ|1|a|A|792
6VZJ|1|a|A|793
6VZJ|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2

Chain m

50S ribosomal protein L34