J3_6VZJ_030

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6VZJ|1|D|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VZJ_030 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1236

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6VZJ|1|D|C|990
6VZJ|1|D|U|991
6VZJ|1|D|U|992
6VZJ|1|D|G|993
6VZJ|1|D|A|994
6VZJ|1|D|C|995
6VZJ|1|D|A|996
6VZJ|1|D|U|997
*
6VZJ|1|D|A|1044
6VZJ|1|D|C|1045
6VZJ|1|D|A|1046
6VZJ|1|D|G|1047
*
6VZJ|1|D|C|1210
6VZJ|1|D|U|1211
6VZJ|1|D|U|1212
6VZJ|1|D|A|1213
6VZJ|1|D|C|1214
6VZJ|1|D|G|1215

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14