J3_6VZJ_034

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6VZJ|1|a|U|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VZJ_034 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0459

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6VZJ|1|a|G|297
6VZJ|1|a|G|298
6VZJ|1|a|A|299
6VZJ|1|a|A|300
6VZJ|1|a|G|301
*
6VZJ|1|a|C|316
6VZJ|1|a|G|317
6VZJ|1|a|C|318
6VZJ|1|a|G|319
6VZJ|1|a|A|320
6VZJ|1|a|U|321
6VZJ|1|a|A|322
6VZJ|1|a|C|323
6VZJ|1|a|A|324
6VZJ|1|a|G|325
*
6VZJ|1|a|C|337
6VZJ|1|a|G|338
6VZJ|1|a|U|339
6VZJ|1|a|A|340
6VZJ|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4