J3_6W2S_002

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GCCACUGC*GACAUACC*GUUUU

Length

21 nucleotides

Bulged bases

6W2S|1|0|U|551, 6W2S|1|0|C|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2S|1|0|G|523
6W2S|1|0|C|524
6W2S|1|0|C|525
6W2S|1|0|A|526
6W2S|1|0|C|527
6W2S|1|0|U|528
6W2S|1|0|G|529
6W2S|1|0|C|530
*
6W2S|1|0|G|547
6W2S|1|0|A|548
6W2S|1|0|C|549
6W2S|1|0|A|550
6W2S|1|0|U|551
6W2S|1|0|A|552
6W2S|1|0|C|553
6W2S|1|0|C|554
*
6W2S|1|0|G|566
6W2S|1|0|U|567
6W2S|1|0|U|568
6W2S|1|0|U|569
6W2S|1|0|U|570

Current chains

Chain 0

CrPV 5'-UTR IRES

Nearby chains

Chain 1

Eukaryotic translation initiation factor 3 subunit A

Chain 2

Eukaryotic translation initiation factor 3 subunit C

Chain S

eS17