J3_6W2S_003

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GAGAA*UGAAGC*GUCUUCCC

Length

19 nucleotides

Bulged bases

6W2S|1|0|A|620, 6W2S|1|0|U|657

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2S|1|0|G|619
6W2S|1|0|A|620
6W2S|1|0|G|621
6W2S|1|0|A|622
6W2S|1|0|A|623
*
6W2S|1|0|U|642
6W2S|1|0|G|643
6W2S|1|0|A|644
6W2S|1|0|A|645
6W2S|1|0|G|646
6W2S|1|0|C|647
*
6W2S|1|0|G|656
6W2S|1|0|U|657
6W2S|1|0|C|658
6W2S|1|0|U|659
6W2S|1|0|U|660
6W2S|1|0|C|661
6W2S|1|0|C|662
6W2S|1|0|C|663

Current chains

Chain 0

CrPV 5'-UTR IRES

Nearby chains

Chain a

eS25