J3_6W2S_007
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6W2S|1|A|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6W2S_007 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0995
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6W2S|1|A|A|938
6W2S|1|A|U|939
6W2S|1|A|U|940
6W2S|1|A|C|941
*
6W2S|1|A|G|985
6W2S|1|A|G|986
6W2S|1|A|A|987
6W2S|1|A|C|988
6W2S|1|A|C|989
6W2S|1|A|A|990
6W2S|1|A|G|991
6W2S|1|A|A|992
6W2S|1|A|G|993
*
6W2S|1|A|C|1000
6W2S|1|A|A|1001
6W2S|1|A|U|1002
6W2S|1|A|U|1003
6W2S|1|A|U|1004
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain C
- eS1
- Chain O
- uS15
- Chain P
- uS11
- Chain b
- eS26
Coloring options: