J3_6W2S_010

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUGGA*UAC*GGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2S|1|A|G|1224
6W2S|1|A|U|1225
6W2S|1|A|G|1226
6W2S|1|A|G|1227
6W2S|1|A|A|1228
*
6W2S|1|A|U|1530
6W2S|1|A|A|1531
6W2S|1|A|C|1532
*
6W2S|1|A|G|1638
6W2S|1|A|G|1639
6W2S|1|A|A|1640
6W2S|1|A|A|1641
6W2S|1|A|U|1642

Current chains

Chain A

18S rRNA

Nearby chains

Chain 0

CrPV 5'-UTR IRES

Chain G

uS7

Chain R

uS9

Chain T

uS13

Chain U

eS19