J3_6W2S_011
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 6W2S|1|A|A|1240, 6W2S|1|A|G|1256, 6W2S|1|A|A|1258, 6W2S|1|A|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6W2S_011 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1158
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6W2S|1|A|C|1237
6W2S|1|A|U|1238
6W2S|1|A|U|1239
6W2S|1|A|A|1240
6W2S|1|A|A|1241
6W2S|1|A|U|1242
6W2S|1|A|U|1243
6W2S|1|A|U|1244
*
6W2S|1|A|G|1255
6W2S|1|A|G|1256
6W2S|1|A|G|1257
6W2S|1|A|A|1258
6W2S|1|A|A|1259
6W2S|1|A|A|1260
6W2S|1|A|C|1261
6W2S|1|A|C|1262
6W2S|1|A|U|1263
6W2S|1|A|C|1264
6W2S|1|A|A|1265
6W2S|1|A|C|1266
*
6W2S|1|A|G|1516
6W2S|1|A|G|1517
6W2S|1|A|C|1518
6W2S|1|A|U|1519
6W2S|1|A|G|1520
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain Q
- uS19
- Chain T
- uS13
- Chain V
- uS10
- Chain e
- eS29
Coloring options: