J3_6W2S_015
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CUGGC*GGACAAG*CCCGAGAUUG
- Length
- 22 nucleotides
- Bulged bases
- 6W2S|1|A|U|1477
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6W2S|1|A|C|1391
6W2S|1|A|U|1392
6W2S|1|A|G|1393
6W2S|1|A|G|1394
6W2S|1|A|C|1395
*
6W2S|1|A|G|1450
6W2S|1|A|G|1451
6W2S|1|A|A|1452
6W2S|1|A|C|1453
6W2S|1|A|A|1454
6W2S|1|A|A|1455
6W2S|1|A|G|1456
*
6W2S|1|A|C|1470
6W2S|1|A|C|1471
6W2S|1|A|C|1472
6W2S|1|A|G|1473
6W2S|1|A|A|1474
6W2S|1|A|G|1475
6W2S|1|A|A|1476
6W2S|1|A|U|1477
6W2S|1|A|U|1478
6W2S|1|A|G|1479
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain E
- uS3
- Chain G
- uS7
- Chain R
- uS9
- Chain S
- eS17
- Chain V
- uS10
- Chain d
- eS28
- Chain e
- eS29
- Chain h
- RACK1
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