J3_6W2S_020

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UGGA*UUAAGAG*CAUUA

Length

16 nucleotides

Bulged bases

6W2S|1|A|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2S|1|A|U|682
6W2S|1|A|G|683
6W2S|1|A|G|684
6W2S|1|A|A|685
*
6W2S|1|A|U|917
6W2S|1|A|U|918
6W2S|1|A|A|919
6W2S|1|A|A|920
6W2S|1|A|G|921
6W2S|1|A|A|922
6W2S|1|A|G|923
*
6W2S|1|A|C|1019
6W2S|1|A|A|1020
6W2S|1|A|U|1021
6W2S|1|A|U|1022
6W2S|1|A|A|1023

Current chains

Chain A

18S rRNA

Nearby chains

Chain I

eS7

Chain M

uS17

Chain O

uS15

Chain X

uS8

Chain Y

uS12

Chain c

eS27