J3_6W6K_009

3D structure

PDB id

6W6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Activated-high-Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6W6K_009 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.3324

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6W6K|1|A|U|1073
6W6K|1|A|G|1074
*
6W6K|1|A|U|1083
6W6K|1|A|G|1084
6W6K|1|A|U|1085
6W6K|1|A|U|1086
6W6K|1|A|G|1087
*
6W6K|1|A|C|1098
6W6K|1|A|G|1099
6W6K|1|A|C|1100
6W6K|1|A|A|1101
6W6K|1|A|A|1102

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S5