J3_6WD2_039

3D structure

PDB id

6WD2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6WD2|1|1|U|321, 6WD2|1|1|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WD2_039 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1553

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6WD2|1|1|G|297
6WD2|1|1|G|298
6WD2|1|1|A|299
6WD2|1|1|A|300
6WD2|1|1|G|301
*
6WD2|1|1|C|316
6WD2|1|1|G|317
6WD2|1|1|C|318
6WD2|1|1|G|319
6WD2|1|1|A|320
6WD2|1|1|U|321
6WD2|1|1|A|322
6WD2|1|1|C|323
6WD2|1|1|A|324
6WD2|1|1|G|325
*
6WD2|1|1|C|337
6WD2|1|1|G|338
6WD2|1|1|U|339
6WD2|1|1|A|340
6WD2|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24