J3_6WD4_030

3D structure

PDB id

6WD4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAGC*GCGCGAUACAG*CGUAC

Length

22 nucleotides

Bulged bases

6WD4|1|1|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WD4|1|1|G|297
6WD4|1|1|G|298
6WD4|1|1|A|299
6WD4|1|1|A|300
6WD4|1|1|G|301
6WD4|1|1|C|302
*
6WD4|1|1|G|315
6WD4|1|1|C|316
6WD4|1|1|G|317
6WD4|1|1|C|318
6WD4|1|1|G|319
6WD4|1|1|A|320
6WD4|1|1|U|321
6WD4|1|1|A|322
6WD4|1|1|C|323
6WD4|1|1|A|324
6WD4|1|1|G|325
*
6WD4|1|1|C|337
6WD4|1|1|G|338
6WD4|1|1|U|339
6WD4|1|1|A|340
6WD4|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24