J3_6WD7_004

3D structure

PDB id

6WD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WD7_004 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.1078

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6WD7|1|1|C|698
6WD7|1|1|A|699
6WD7|1|1|G|700
*
6WD7|1|1|C|732
6WD7|1|1|G|733
6WD7|1|1|A|734
6WD7|1|1|A|735
6WD7|1|1|C|736
*
6WD7|1|1|G|760
6WD7|1|1|A|761
6WD7|1|1|U|762
6WD7|1|1|G|763

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2