3D structure

PDB id
6WD7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
6WD7|1|1|U|2334
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6WD7|1|1|C|2295
6WD7|1|1|U|2296
6WD7|1|1|A|2297
6WD7|1|1|A|2298
6WD7|1|1|U|2299
*
6WD7|1|1|A|2317
6WD7|1|1|G|2318
6WD7|1|1|G|2319
6WD7|1|1|U|2320
6WD7|1|1|U|2321
6WD7|1|1|A|2322
6WD7|1|1|G|2323
*
6WD7|1|1|C|2332
6WD7|1|1|A|2333
6WD7|1|1|U|2334
6WD7|1|1|A|2335
6WD7|1|1|A|2336
6WD7|1|1|G|2337

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
5S ribosomal RNA; 5S rRNA
Chain 5
Transfer RNA; tRNA
Chain e
50S ribosomal protein L5
Chain o
50S ribosomal protein L18
Chain w
50S ribosomal protein L27

Coloring options:

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