J3_6WD8_030

3D structure

PDB id

6WD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6WD8|1|1|U|321, 6WD8|1|1|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WD8_030 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.168

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6WD8|1|1|G|297
6WD8|1|1|G|298
6WD8|1|1|A|299
6WD8|1|1|A|300
6WD8|1|1|G|301
*
6WD8|1|1|C|316
6WD8|1|1|G|317
6WD8|1|1|C|318
6WD8|1|1|G|319
6WD8|1|1|A|320
6WD8|1|1|U|321
6WD8|1|1|A|322
6WD8|1|1|C|323
6WD8|1|1|A|324
6WD8|1|1|G|325
*
6WD8|1|1|C|337
6WD8|1|1|G|338
6WD8|1|1|U|339
6WD8|1|1|A|340
6WD8|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24