J3_6WD9_003

3D structure

PDB id

6WD9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6WD9|1|1|U|686, 6WD9|1|1|A|792, 6WD9|1|1|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WD9_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1418

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6WD9|1|1|U|683
6WD9|1|1|G|684
6WD9|1|1|A|685
6WD9|1|1|U|686
6WD9|1|1|C|687
6WD9|1|1|U|688
6WD9|1|1|A|689
*
6WD9|1|1|U|773
6WD9|1|1|G|774
6WD9|1|1|G|775
*
6WD9|1|1|C|791
6WD9|1|1|A|792
6WD9|1|1|A|793
6WD9|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2