J3_6WDA_034
3D structure
- PDB id
- 6WDA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 6WDA|1|3|C|48, 6WDA|1|3|A|50, 6WDA|1|3|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WDA_034 not in the Motif Atlas
- Homologous match to J3_6CZR_058
- Geometric discrepancy: 0.1428
- The information below is about J3_6CZR_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.3
- Basepair signature
- cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6WDA|1|3|G|46
6WDA|1|3|C|47
6WDA|1|3|C|48
6WDA|1|3|U|49
6WDA|1|3|A|50
6WDA|1|3|A|51
6WDA|1|3|C|52
*
6WDA|1|3|G|359
6WDA|1|3|G|360
6WDA|1|3|G|361
6WDA|1|3|G|362
6WDA|1|3|A|363
6WDA|1|3|A|364
6WDA|1|3|U|365
6WDA|1|3|A|366
6WDA|1|3|U|367
*
6WDA|1|3|A|393
6WDA|1|3|G|394
6WDA|1|3|C|395
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain 8
- Elongation factor Tu
- Chain Q
- 30S ribosomal protein S12
- Chain U
- 30S ribosomal protein S16
Coloring options: