J3_6WDD_030
3D structure
- PDB id
- 6WDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAAG*CGCGAUACAG*CGUAC
- Length
- 20 nucleotides
- Bulged bases
- 6WDD|1|1|U|321, 6WDD|1|1|C|323
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WDD_030 not in the Motif Atlas
- Homologous match to J3_5J7L_068
- Geometric discrepancy: 0.1476
- The information below is about J3_5J7L_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46299.2
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
6WDD|1|1|G|297
6WDD|1|1|G|298
6WDD|1|1|A|299
6WDD|1|1|A|300
6WDD|1|1|G|301
*
6WDD|1|1|C|316
6WDD|1|1|G|317
6WDD|1|1|C|318
6WDD|1|1|G|319
6WDD|1|1|A|320
6WDD|1|1|U|321
6WDD|1|1|A|322
6WDD|1|1|C|323
6WDD|1|1|A|324
6WDD|1|1|G|325
*
6WDD|1|1|C|337
6WDD|1|1|G|338
6WDD|1|1|U|339
6WDD|1|1|A|340
6WDD|1|1|C|341
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L4
- Chain u
- 50S ribosomal protein L24
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