J3_6WDF_010

3D structure

PDB id

6WDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

6WDF|1|1|U|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDF|1|1|C|2295
6WDF|1|1|U|2296
6WDF|1|1|A|2297
6WDF|1|1|A|2298
6WDF|1|1|U|2299
*
6WDF|1|1|A|2317
6WDF|1|1|G|2318
6WDF|1|1|G|2319
6WDF|1|1|U|2320
6WDF|1|1|U|2321
6WDF|1|1|A|2322
6WDF|1|1|G|2323
*
6WDF|1|1|C|2332
6WDF|1|1|A|2333
6WDF|1|1|U|2334
6WDF|1|1|A|2335
6WDF|1|1|A|2336
6WDF|1|1|G|2337

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain e

50S ribosomal protein L5

Chain o

50S ribosomal protein L18

Chain w

50S ribosomal protein L27