3D structure

PDB id
6WDF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGAAG*CGCGAUACAG*CGUAC
Length
20 nucleotides
Bulged bases
6WDF|1|1|U|321, 6WDF|1|1|C|323
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6WDF_038 not in the Motif Atlas
Homologous match to J3_5J7L_068
Geometric discrepancy: 0.1511
The information below is about J3_5J7L_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

6WDF|1|1|G|297
6WDF|1|1|G|298
6WDF|1|1|A|299
6WDF|1|1|A|300
6WDF|1|1|G|301
*
6WDF|1|1|C|316
6WDF|1|1|G|317
6WDF|1|1|C|318
6WDF|1|1|G|319
6WDF|1|1|A|320
6WDF|1|1|U|321
6WDF|1|1|A|322
6WDF|1|1|C|323
6WDF|1|1|A|324
6WDF|1|1|G|325
*
6WDF|1|1|C|337
6WDF|1|1|G|338
6WDF|1|1|U|339
6WDF|1|1|A|340
6WDF|1|1|C|341

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain d
50S ribosomal protein L4
Chain u
50S ribosomal protein L24

Coloring options:


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