J3_6WDJ_012
3D structure
- PDB id
- 6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUG*CC*GAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WDJ_012 not in the Motif Atlas
- Homologous match to J3_5J7L_047
- Geometric discrepancy: 0.2234
- The information below is about J3_5J7L_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30104.1
- Basepair signature
- cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6WDJ|1|1|C|2789
6WDJ|1|1|U|2790
6WDJ|1|1|G|2791
*
6WDJ|1|1|C|2805
6WDJ|1|1|C|2806
*
6WDJ|1|1|G|2892
6WDJ|1|1|A|2893
6WDJ|1|1|G|2894
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain s
- 50S ribosomal protein L22
Coloring options: