J3_6WDJ_032
3D structure
- PDB id
- 6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6WDJ|1|1|A|2388, 6WDJ|1|1|U|2390, 6WDJ|1|1|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WDJ_032 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1204
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6WDJ|1|1|G|2282
6WDJ|1|1|C|2283
6WDJ|1|1|A|2284
*
6WDJ|1|1|U|2384
6WDJ|1|1|C|2385
6WDJ|1|1|A|2386
6WDJ|1|1|U|2387
6WDJ|1|1|A|2388
6WDJ|1|1|G|2389
6WDJ|1|1|U|2390
6WDJ|1|1|G|2391
6WDJ|1|1|A|2392
6WDJ|1|1|U|2393
6WDJ|1|1|C|2394
6WDJ|1|1|C|2395
*
6WDJ|1|1|G|2421
6WDJ|1|1|C|2422
6WDJ|1|1|U|2423
6WDJ|1|1|C|2424
6WDJ|1|1|A|2425
6WDJ|1|1|A|2426
6WDJ|1|1|C|2427
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain C
- 50S ribosomal protein L33
- Chain E
- 50S ribosomal protein L35
- Chain l
- 50S ribosomal protein L15
- Chain w
- 50S ribosomal protein L27
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