J3_6WDR_007

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCAAAGAUUAAGCCAU*AGGCGCGCAAAU*AGUGACAA

Length

36 nucleotides

Bulged bases

6WDR|1|2|A|43, 6WDR|1|2|A|47, 6WDR|1|2|C|694, 6WDR|1|2|A|731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|U|37
6WDR|1|2|C|38
6WDR|1|2|A|39
6WDR|1|2|A|40
6WDR|1|2|A|41
6WDR|1|2|G|42
6WDR|1|2|A|43
6WDR|1|2|U|44
6WDR|1|2|U|45
6WDR|1|2|A|46
6WDR|1|2|A|47
6WDR|1|2|G|48
6WDR|1|2|C|49
6WDR|1|2|C|50
6WDR|1|2|A|51
6WDR|1|2|U|52
*
6WDR|1|2|A|691
6WDR|1|2|G|692
6WDR|1|2|G|693
6WDR|1|2|C|694
6WDR|1|2|G|695
6WDR|1|2|C|696
6WDR|1|2|G|697
6WDR|1|2|C|698
6WDR|1|2|A|699
6WDR|1|2|A|700
6WDR|1|2|A|701
6WDR|1|2|U|702
*
6WDR|1|2|A|727
6WDR|1|2|G|728
6WDR|1|2|U|729
6WDR|1|2|G|730
6WDR|1|2|A|731
6WDR|1|2|C|732
6WDR|1|2|A|733
6WDR|1|2|A|734

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain J

40S ribosomal protein S9-A

Chain X

40S ribosomal protein S23-A

Chain Y

40S ribosomal protein S24-A

Chain k

Ribosome biogenesis protein TSR1