J3_6WDR_012
3D structure
- PDB id
- 6WDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAAC*GGACUA*UGGAAGUUUG
- Length
- 20 nucleotides
- Bulged bases
- 6WDR|1|2|U|1565, 6WDR|1|2|U|1566
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WDR|1|2|U|1487
6WDR|1|2|A|1488
6WDR|1|2|A|1489
6WDR|1|2|C|1490
*
6WDR|1|2|G|1538
6WDR|1|2|G|1539
6WDR|1|2|A|1540
6WDR|1|2|C|1541
6WDR|1|2|U|1542
6WDR|1|2|A|1543
*
6WDR|1|2|U|1559
6WDR|1|2|G|1560
6WDR|1|2|G|1561
6WDR|1|2|A|1562
6WDR|1|2|A|1563
6WDR|1|2|G|1564
6WDR|1|2|U|1565
6WDR|1|2|U|1566
6WDR|1|2|U|1567
6WDR|1|2|G|1568
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain F
- 40S ribosomal protein S5
- Chain Q
- 40S ribosomal protein S16-A
- Chain R
- 40S ribosomal protein S17-A
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29-A
- Chain g
- Guanine nucleotide-binding protein subunit beta-like protein
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