J3_6WDR_014

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCACCACCAGGA*UCCUAGUAA*UGAUUACGUCCCUGC

Length

36 nucleotides

Bulged bases

6WDR|1|2|C|1311, 6WDR|1|2|C|1732, 6WDR|1|2|C|1767, 6WDR|1|2|C|1772, 6WDR|1|2|U|1773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|G|1307
6WDR|1|2|C|1308
6WDR|1|2|A|1309
6WDR|1|2|C|1310
6WDR|1|2|C|1311
6WDR|1|2|A|1312
6WDR|1|2|C|1313
6WDR|1|2|C|1314
6WDR|1|2|A|1315
6WDR|1|2|G|1316
6WDR|1|2|G|1317
6WDR|1|2|A|1318
*
6WDR|1|2|U|1731
6WDR|1|2|C|1732
6WDR|1|2|C|1733
6WDR|1|2|U|1734
6WDR|1|2|A|1735
6WDR|1|2|G|1736
6WDR|1|2|U|1737
6WDR|1|2|A|1738
6WDR|1|2|A|1739
*
6WDR|1|2|U|1761
6WDR|1|2|G|1762
6WDR|1|2|A|1763
6WDR|1|2|U|1764
6WDR|1|2|U|1765
6WDR|1|2|A|1766
6WDR|1|2|C|1767
6WDR|1|2|G|1768
6WDR|1|2|U|1769
6WDR|1|2|C|1770
6WDR|1|2|C|1771
6WDR|1|2|C|1772
6WDR|1|2|U|1773
6WDR|1|2|G|1774
6WDR|1|2|C|1775

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16-A

Chain U

40S ribosomal protein S20

Chain c

40S ribosomal protein S28-A