J3_6WNV_014
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 6WNV|1|4|U|72, 6WNV|1|4|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WNV_014 not in the Motif Atlas
- Geometric match to J3_5J7L_037
- Geometric discrepancy: 0.112
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6WNV|1|4|A|56
6WNV|1|4|C|57
*
6WNV|1|4|G|70
6WNV|1|4|A|71
6WNV|1|4|U|72
6WNV|1|4|A|73
6WNV|1|4|A|74
6WNV|1|4|G|75
6WNV|1|4|C|76
*
6WNV|1|4|G|110
6WNV|1|4|A|111
6WNV|1|4|U|112
6WNV|1|4|U|113
6WNV|1|4|U|114
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L34
- Chain t
- 50S ribosomal protein L23
- Chain y
- 50S ribosomal protein L29
Coloring options: