J3_6WNV_015

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6WNV|1|4|U|686, 6WNV|1|4|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WNV_015 not in the Motif Atlas

Geometric match to J3_5J7L_038

Geometric discrepancy: 0.091

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6WNV|1|4|U|683
6WNV|1|4|G|684
6WNV|1|4|A|685
6WNV|1|4|U|686
6WNV|1|4|C|687
6WNV|1|4|U|688
6WNV|1|4|A|689
*
6WNV|1|4|U|773
6WNV|1|4|G|774
6WNV|1|4|G|775
*
6WNV|1|4|C|791
6WNV|1|4|A|792
6WNV|1|4|A|793
6WNV|1|4|A|794

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2