J3_6WNV_021

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WNV_021 not in the Motif Atlas

Geometric match to J3_5J7L_043

Geometric discrepancy: 0.114

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

6WNV|1|4|U|1472
6WNV|1|4|C|1473
6WNV|1|4|G|1474
6WNV|1|4|A|1475
6WNV|1|4|C|1476
6WNV|1|4|C|1477
*
6WNV|1|4|G|1510
6WNV|1|4|A|1511
6WNV|1|4|A|1512
6WNV|1|4|A|1513
*
6WNV|1|4|U|1530
6WNV|1|4|A|1531

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L23