J3_6WNV_024
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 6WNV|1|4|A|2646, 6WNV|1|4|U|2647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WNV_024 not in the Motif Atlas
- Geometric match to J3_5J7L_046
- Geometric discrepancy: 0.123
- The information below is about J3_5J7L_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6WNV|1|4|C|2645
6WNV|1|4|A|2646
6WNV|1|4|U|2647
6WNV|1|4|C|2648
*
6WNV|1|4|G|2673
6WNV|1|4|U|2674
6WNV|1|4|A|2675
*
6WNV|1|4|U|2689
6WNV|1|4|U|2690
6WNV|1|4|U|2691
6WNV|1|4|A|2692
6WNV|1|4|A|2693
6WNV|1|4|A|2694
6WNV|1|4|G|2695
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L14
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