J3_6WNV_034

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6WNV|1|4|U|321, 6WNV|1|4|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WNV_034 not in the Motif Atlas

Geometric match to J3_5J7L_068

Geometric discrepancy: 0.1598

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6WNV|1|4|G|297
6WNV|1|4|G|298
6WNV|1|4|A|299
6WNV|1|4|A|300
6WNV|1|4|G|301
*
6WNV|1|4|C|316
6WNV|1|4|G|317
6WNV|1|4|C|318
6WNV|1|4|G|319
6WNV|1|4|A|320
6WNV|1|4|U|321
6WNV|1|4|A|322
6WNV|1|4|C|323
6WNV|1|4|A|324
6WNV|1|4|G|325
*
6WNV|1|4|C|337
6WNV|1|4|G|338
6WNV|1|4|U|339
6WNV|1|4|A|340
6WNV|1|4|C|341

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24