J3_6WNV_037
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6WNV|1|4|U|2518, 6WNV|1|4|A|2554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WNV_037 not in the Motif Atlas
- Geometric match to J3_5J7L_070
- Geometric discrepancy: 0.1014
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6WNV|1|4|G|2410
6WNV|1|4|C|2411
6WNV|1|4|A|2412
*
6WNV|1|4|U|2512
6WNV|1|4|C|2513
6WNV|1|4|A|2514
6WNV|1|4|U|2515
6WNV|1|4|A|2516
6WNV|1|4|G|2517
6WNV|1|4|U|2518
6WNV|1|4|G|2519
6WNV|1|4|A|2520
6WNV|1|4|U|2521
6WNV|1|4|C|2522
6WNV|1|4|C|2523
*
6WNV|1|4|G|2549
6WNV|1|4|C|2550
6WNV|1|4|U|2551
6WNV|1|4|C|2552
6WNV|1|4|A|2553
6WNV|1|4|A|2554
6WNV|1|4|C|2555
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L35
- Chain l
- 50S ribosomal protein L15
- Chain w
- 50S ribosomal protein L27
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