J3_6WNW_016

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6WNW|1|4|U|686, 6WNW|1|4|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WNW_016 not in the Motif Atlas

Geometric match to J3_5J7L_038

Geometric discrepancy: 0.0853

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6WNW|1|4|U|683
6WNW|1|4|G|684
6WNW|1|4|A|685
6WNW|1|4|U|686
6WNW|1|4|C|687
6WNW|1|4|U|688
6WNW|1|4|A|689
*
6WNW|1|4|U|773
6WNW|1|4|G|774
6WNW|1|4|G|775
*
6WNW|1|4|C|791
6WNW|1|4|A|792
6WNW|1|4|A|793
6WNW|1|4|A|794

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2