J3_6WNW_034

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6WNW|1|4|U|321, 6WNW|1|4|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WNW_034 not in the Motif Atlas

Geometric match to J3_5J7L_068

Geometric discrepancy: 0.166

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6WNW|1|4|G|297
6WNW|1|4|G|298
6WNW|1|4|A|299
6WNW|1|4|A|300
6WNW|1|4|G|301
*
6WNW|1|4|C|316
6WNW|1|4|G|317
6WNW|1|4|C|318
6WNW|1|4|G|319
6WNW|1|4|A|320
6WNW|1|4|U|321
6WNW|1|4|A|322
6WNW|1|4|C|323
6WNW|1|4|A|324
6WNW|1|4|G|325
*
6WNW|1|4|C|337
6WNW|1|4|G|338
6WNW|1|4|U|339
6WNW|1|4|A|340
6WNW|1|4|C|341

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24