J3_6WQN_003

3D structure

PDB id

6WQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAC*GGGUUGUAG*CUG

Length

17 nucleotides

Bulged bases

6WQN|1|1|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WQN_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.5534

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6WQN|1|1|C|272
6WQN|1|1|A|273
6WQN|1|1|A|274
6WQN|1|1|A|275
6WQN|1|1|C|276
*
6WQN|1|1|G|295
6WQN|1|1|G|296
6WQN|1|1|G|297
6WQN|1|1|U|298
6WQN|1|1|U|299
6WQN|1|1|G|300
6WQN|1|1|U|301
6WQN|1|1|A|302
6WQN|1|1|G|303
*
6WQN|1|1|C|414
6WQN|1|1|U|415
6WQN|1|1|G|416

Current chains

Chain 1

23S rRNA

Nearby chains