J3_6WRS_005

3D structure

PDB id

6WRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WRS_005 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.1426

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6WRS|1|1|C|743
6WRS|1|1|A|744
6WRS|1|1|G|745
*
6WRS|1|1|C|777
6WRS|1|1|G|778
6WRS|1|1|A|779
6WRS|1|1|A|780
6WRS|1|1|C|781
*
6WRS|1|1|G|805
6WRS|1|1|A|806
6WRS|1|1|U|807
6WRS|1|1|G|808

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2