J3_6WRU_018

3D structure

PDB id

6WRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGACUAUAG*CGACGAUGGUAG*CGCUAGAGUAGAACGUU

Length

39 nucleotides

Bulged bases

6WRU|1|2|U|10, 6WRU|1|2|A|11, 6WRU|1|2|U|12, 6WRU|1|2|A|103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WRU|1|2|G|5
6WRU|1|2|U|6
6WRU|1|2|G|7
6WRU|1|2|A|8
6WRU|1|2|C|9
6WRU|1|2|U|10
6WRU|1|2|A|11
6WRU|1|2|U|12
6WRU|1|2|A|13
6WRU|1|2|G|14
*
6WRU|1|2|C|66
6WRU|1|2|G|67
6WRU|1|2|A|68
6WRU|1|2|C|69
6WRU|1|2|G|70
6WRU|1|2|A|71
6WRU|1|2|U|72
6WRU|1|2|G|73
6WRU|1|2|G|74
6WRU|1|2|U|75
6WRU|1|2|A|76
6WRU|1|2|G|77
*
6WRU|1|2|C|92
6WRU|1|2|G|93
6WRU|1|2|C|94
6WRU|1|2|U|95
6WRU|1|2|A|96
6WRU|1|2|G|97
6WRU|1|2|A|98
6WRU|1|2|G|99
6WRU|1|2|U|100
6WRU|1|2|A|101
6WRU|1|2|G|102
6WRU|1|2|A|103
6WRU|1|2|A|104
6WRU|1|2|C|105
6WRU|1|2|G|106
6WRU|1|2|U|107
6WRU|1|2|U|108

Current chains

Chain 2

5S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain H

uL25

Chain I

50S ribosomal protein L27

Chain Y

50S ribosomal protein L16

Chain a

50S ribosomal protein L18