J3_6WYV_011

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGAAC*GUUGAU*AAUGAACC

Length

19 nucleotides

Bulged bases

6WYV|1|I|U|2833, 6WYV|1|I|A|2835, 6WYV|1|I|U|2884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WYV|1|I|G|2811
6WYV|1|I|G|2812
6WYV|1|I|A|2813
6WYV|1|I|A|2814
6WYV|1|I|C|2815
*
6WYV|1|I|G|2831
6WYV|1|I|U|2832
6WYV|1|I|U|2833
6WYV|1|I|G|2834
6WYV|1|I|A|2835
6WYV|1|I|U|2836
*
6WYV|1|I|A|2882
6WYV|1|I|A|2883
6WYV|1|I|U|2884
6WYV|1|I|G|2885
6WYV|1|I|A|2886
6WYV|1|I|A|2887
6WYV|1|I|C|2888
6WYV|1|I|C|2889

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3