J3_6WYV_015

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCGGUGAUCUAGC*GCUGG*CAAACCGG

Length

26 nucleotides

Bulged bases

6WYV|1|I|U|686, 6WYV|1|I|A|792, 6WYV|1|I|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WYV|1|I|C|679
6WYV|1|I|C|680
6WYV|1|I|G|681
6WYV|1|I|G|682
6WYV|1|I|U|683
6WYV|1|I|G|684
6WYV|1|I|A|685
6WYV|1|I|U|686
6WYV|1|I|C|687
6WYV|1|I|U|688
6WYV|1|I|A|689
6WYV|1|I|G|690
6WYV|1|I|C|691
*
6WYV|1|I|G|771
6WYV|1|I|C|772
6WYV|1|I|U|773
6WYV|1|I|G|774
6WYV|1|I|G|775
*
6WYV|1|I|C|791
6WYV|1|I|A|792
6WYV|1|I|A|793
6WYV|1|I|A|794
6WYV|1|I|C|795
6WYV|1|I|C|796
6WYV|1|I|G|797
6WYV|1|I|G|798

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain M

50S ribosomal protein L4