J3_6WYV_019

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCA*UCAUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

6WYV|1|I|A|2388, 6WYV|1|I|U|2390, 6WYV|1|I|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WYV_019 not in the Motif Atlas

Homologous match to J3_5J7L_070

Geometric discrepancy: 0.0824

The information below is about J3_5J7L_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6WYV|1|I|G|2282
6WYV|1|I|C|2283
6WYV|1|I|A|2284
*
6WYV|1|I|U|2384
6WYV|1|I|C|2385
6WYV|1|I|A|2386
6WYV|1|I|U|2387
6WYV|1|I|A|2388
6WYV|1|I|G|2389
6WYV|1|I|U|2390
6WYV|1|I|G|2391
6WYV|1|I|A|2392
6WYV|1|I|U|2393
6WYV|1|I|C|2394
6WYV|1|I|C|2395
*
6WYV|1|I|G|2421
6WYV|1|I|C|2422
6WYV|1|I|U|2423
6WYV|1|I|C|2424
6WYV|1|I|A|2425
6WYV|1|I|A|2426
6WYV|1|I|C|2427

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15