J3_6WYV_021

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

6WYV|1|I|U|72, 6WYV|1|I|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WYV_021 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.0977

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

6WYV|1|I|A|56
6WYV|1|I|C|57
*
6WYV|1|I|G|70
6WYV|1|I|A|71
6WYV|1|I|U|72
6WYV|1|I|A|73
6WYV|1|I|A|74
6WYV|1|I|G|75
6WYV|1|I|C|76
*
6WYV|1|I|G|110
6WYV|1|I|A|111
6WYV|1|I|U|112
6WYV|1|I|U|113
6WYV|1|I|U|114

Current chains

Chain I

23S ribosomal RNA

Nearby chains