J3_6XDQ_015
3D structure
- PDB id
- 6XDQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 6XDQ|1|a|U|686, 6XDQ|1|a|A|792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XDQ_015 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.0548
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6XDQ|1|a|U|683
6XDQ|1|a|G|684
6XDQ|1|a|A|685
6XDQ|1|a|U|686
6XDQ|1|a|C|687
6XDQ|1|a|U|688
6XDQ|1|a|A|689
*
6XDQ|1|a|U|773
6XDQ|1|a|G|774
6XDQ|1|a|G|775
*
6XDQ|1|a|C|791
6XDQ|1|a|A|792
6XDQ|1|a|A|793
6XDQ|1|a|A|794
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain h
- 50S ribosomal protein L2
- Chain m
- 50S ribosomal protein L34
Coloring options: