3D structure

PDB id
6XDR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
GC*GGAAUAU*AGC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XDR_001 not in the Motif Atlas
Homologous match to J3_5J7L_001
Geometric discrepancy: 0.0647
The information below is about J3_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.4
Basepair signature
cWW-cWW-cSW-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6XDR|1|D|G|46
6XDR|1|D|C|47
*
6XDR|1|D|G|361
6XDR|1|D|G|362
6XDR|1|D|A|363
6XDR|1|D|A|364
6XDR|1|D|U|365
6XDR|1|D|A|366
6XDR|1|D|U|367
*
6XDR|1|D|A|393
6XDR|1|D|G|394
6XDR|1|D|C|395

Current chains

Chain D
16S rRNA

Nearby chains

Chain R
30S ribosomal protein S12
Chain U
30S ribosomal protein S16

Coloring options:


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