J3_6XDR_034

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6XDR|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XDR_034 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0459

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6XDR|1|a|G|297
6XDR|1|a|G|298
6XDR|1|a|A|299
6XDR|1|a|A|300
6XDR|1|a|G|301
*
6XDR|1|a|C|316
6XDR|1|a|G|317
6XDR|1|a|C|318
6XDR|1|a|G|319
6XDR|1|a|A|320
6XDR|1|a|U|321
6XDR|1|a|A|322
6XDR|1|a|C|323
6XDR|1|a|A|324
6XDR|1|a|G|325
*
6XDR|1|a|C|337
6XDR|1|a|G|338
6XDR|1|a|U|339
6XDR|1|a|A|340
6XDR|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4