J3_6XGF_014

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

6XGF|1|a|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XGF_014 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.0435

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

6XGF|1|a|A|56
6XGF|1|a|C|57
*
6XGF|1|a|G|70
6XGF|1|a|A|71
6XGF|1|a|U|72
6XGF|1|a|A|73
6XGF|1|a|A|74
6XGF|1|a|G|75
6XGF|1|a|C|76
*
6XGF|1|a|G|110
6XGF|1|a|A|111
6XGF|1|a|U|112
6XGF|1|a|U|113
6XGF|1|a|U|114

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23

Chain e

50S ribosomal protein L29

Chain m

50S ribosomal protein L34