J3_6XGF_030

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6XGF|1|D|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XGF_030 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1237

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6XGF|1|D|C|990
6XGF|1|D|U|991
6XGF|1|D|U|992
6XGF|1|D|G|993
6XGF|1|D|A|994
6XGF|1|D|C|995
6XGF|1|D|A|996
6XGF|1|D|U|997
*
6XGF|1|D|A|1044
6XGF|1|D|C|1045
6XGF|1|D|A|1046
6XGF|1|D|G|1047
*
6XGF|1|D|C|1210
6XGF|1|D|U|1211
6XGF|1|D|U|1212
6XGF|1|D|A|1213
6XGF|1|D|C|1214
6XGF|1|D|G|1215

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14